STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_3121PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: she:Shewmr4_3056 glutathione-dependent formaldehyde-activating, GFA. (134 aa)    
Predicted Functional Partners:
Oter_3122
Hypothetical protein.
       0.541
Oter_3120
PFAM: protein of unknown function DUF88; KEGG: eba:ebA2897 hypothetical protein.
       0.527
Oter_3339
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rfr:Rfer_4026 glyoxalase/bleomycin resistance protein/dioxygenase.
 
    0.487
Oter_0894
PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: syn:sll1502 NADH-dependent glutamate synthase large subunit.
     
 0.472
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.