STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_3177PFAM: inositol monophosphatase; KEGG: cya:CYA_2675 inositol monophosphatase family protein. (272 aa)    
Predicted Functional Partners:
Oter_0333
PFAM: inositol monophosphatase; KEGG: ppd:Ppro_0018 inositol monophosphatase.
  
  
 
0.925
nusA
NusA antitermination factor; Participates in both transcription termination and antitermination.
   
   0.613
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.577
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.577
Oter_4031
PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: ppd:Ppro_3242 sun protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
  
 
 0.476
Oter_3176
KEGG: ppd:Ppro_0721 putative regulatory protein, FmdB family.
       0.440
hisF
Imidazoleglycerol phosphate synthase, cyclase subunit; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit.
  
  
 0.425
dinB
DNA-directed DNA polymerase; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.
       0.420
Oter_3638
NusG antitermination factor; PFAM: NGN domain protein; KEGG: sru:SRU_2746 hypothetical protein.
  
 
 0.418
Oter_4014
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: msm:MSMEG_1114 short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
    0.401
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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