STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_3203PFAM: regulatory protein LacI; KEGG: art:Arth_0219 transcriptional regulator, LacI family. (375 aa)    
Predicted Functional Partners:
Oter_0894
PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: syn:sll1502 NADH-dependent glutamate synthase large subunit.
    
 
 0.775
Oter_1754
PFAM: TonB-dependent receptor plug; KEGG: ajs:Ajs_1523 TonB-dependent siderophore receptor.
  
     0.625
Oter_2050
Transcriptional regulator, LacI family; PFAM: regulatory protein LacI; KEGG: bld:BLi01180 DegA.
  
     0.612
Oter_3823
PFAM: Carbohydrate-binding CenC domain protein; Immunoglobulin I-set domain protein; Immunoglobulin domain protein; SMART: Immunoglobulin C2 type; KEGG: ppf:Pput_2585 hypothetical protein.
  
     0.595
Oter_3377
PFAM: TonB-dependent receptor plug; KEGG: pcr:Pcryo_1281 TonB-dependent siderophore receptor.
  
     0.593
Oter_0600
PFAM: TonB-dependent receptor plug; KEGG: bch:Bcen2424_6729 TonB-dependent siderophore receptor.
  
     0.585
Oter_0596
PFAM: TonB-dependent receptor plug; KEGG: dac:Daci_4462 TonB-dependent siderophore receptor.
  
     0.579
Oter_1991
PFAM: TonB-dependent receptor plug; KEGG: ajs:Ajs_1523 TonB-dependent siderophore receptor.
  
     0.578
Oter_3766
PFAM: TonB-dependent receptor plug; KEGG: pmy:Pmen_0887 TonB-dependent siderophore receptor.
  
     0.573
Oter_2317
PFAM: TonB-dependent receptor plug; KEGG: ajs:Ajs_1523 TonB-dependent siderophore receptor.
  
     0.569
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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