STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_3205PFAM: Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: aba:Acid345_0736 tetratricopeptide repeat protein. (806 aa)    
Predicted Functional Partners:
Oter_0524
PFAM: Carbamoyltransferase; KEGG: hch:HCH_00212 predicted carbamoyl transferase, NodU family.
  
     0.756
Oter_0845
KEGG: aba:Acid345_2713 cytochrome b subunit of formate dehydrogenase-like.
  
   
 0.624
Oter_0306
PFAM: glycosyl transferase family 2; KEGG: amr:AM1_5172 glycosyl transferase, group 2 family protein.
  
 
 0.517
Oter_3204
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: rba:RB3549 probable lactose operon transcription activator.
       0.499
Oter_1104
Hypothetical protein.
    
 0.474
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.472
htpG
Heat shock protein Hsp90; Molecular chaperone. Has ATPase activity.
   
 0.464
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.445
Oter_0358
PFAM: WD-40 repeat protein; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: afw:Anae109_3558 protein kinase.
  
 0.428
Oter_3206
Hypothetical protein.
       0.400
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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