close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_3207PFAM: glycoside hydrolase family 43; KEGG: aau:AAur_1241 putative glycosyl hydrolase, family 43; Belongs to the glycosyl hydrolase 43 family. (337 aa)    
Predicted Functional Partners:
Oter_3223
KEGG: bth:BT_3656 putative beta-xylosidase.
     0.867
Oter_3717
KEGG: fjo:Fjoh_4223 hypothetical protein.
     0.801
Oter_4268
KEGG: fjo:Fjoh_4223 hypothetical protein.
     0.788
Oter_1373
KEGG: csc:Csac_0437 hypothetical protein.
  
   
 0.672
Oter_2901
PFAM: TonB-dependent receptor plug; KEGG: nmu:Nmul_A1260 TonB-dependent siderophore receptor.
  
     0.661
Oter_3234
PFAM: TonB-dependent receptor plug; KEGG: ana:all2610 ferrichrome-iron receptor.
  
     0.658
Oter_2928
PFAM: TonB-dependent receptor plug; KEGG: ajs:Ajs_1523 TonB-dependent siderophore receptor.
  
     0.648
Oter_3738
PFAM: Cupin 2 conserved barrel domain protein; KEGG: sus:Acid_4750 cupin 2, conserved barrel domain protein.
  
     0.605
Oter_0600
PFAM: TonB-dependent receptor plug; KEGG: bch:Bcen2424_6729 TonB-dependent siderophore receptor.
  
     0.574
Oter_3199
PFAM: TonB-dependent receptor plug; KEGG: reh:H16_B0785 outer membrane receptor, TonB-dependent.
  
     0.563
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.