STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_3208Alpha-N-arabinofuranosidase; SMART: alpha-L-arabinofuranosidase domain protein; KEGG: sus:Acid_2094 alpha-N-arabinofuranosidase. (703 aa)    
Predicted Functional Partners:
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
 
 0.837
Oter_3352
Beta-glucuronidase; PFAM: glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; KEGG: sus:Acid_7301 glycoside hydrolase family 2, sugar binding; Belongs to the glycosyl hydrolase 2 family.
  
  
  0.825
uxaC
PFAM: Glucuronate isomerase; KEGG: sus:Acid_5330 glucuronate isomerase.
     
 0.808
Oter_3209
PFAM: glycoside hydrolase family 10; KEGG: sde:Sde_0323 TonB-like.
 
   
 0.682
Oter_3214
PFAM: protein of unknown function DUF1680; KEGG: sde:Sde_0778 acetyl-CoA carboxylase, biotin carboxylase.
 
   
 0.677
Oter_1696
PFAM: protein of unknown function DUF1680; KEGG: sus:Acid_3381 protein of unknown function DUF1680.
   
 0.626
Oter_1363
Hypothetical protein; KEGG: sus:Acid_1472 glycoside hydrolase, clan GH-D.
 
     0.581
Oter_3207
PFAM: glycoside hydrolase family 43; KEGG: aau:AAur_1241 putative glycosyl hydrolase, family 43; Belongs to the glycosyl hydrolase 43 family.
       0.504
Oter_3212
KEGG: sus:Acid_2100 alpha-N-arabinofuranosidase; PFAM: Carbohydrate-binding CenC domain protein; SMART: alpha-L-arabinofuranosidase domain protein.
 
    
0.504
Oter_3998
KEGG: sus:Acid_3829 hypothetical protein.
  
     0.488
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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