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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_3209PFAM: glycoside hydrolase family 10; KEGG: sde:Sde_0323 TonB-like. (606 aa)    
Predicted Functional Partners:
Oter_2227
Endo-1,4-beta-xylanase; PFAM: glycoside hydrolase family 10; KEGG: sus:Acid_2681 endo-1,4-beta-xylanase.
  
     0.744
Oter_3211
KEGG: bvu:BVU_2232 hypothetical protein.
   
   0.683
Oter_3208
Alpha-N-arabinofuranosidase; SMART: alpha-L-arabinofuranosidase domain protein; KEGG: sus:Acid_2094 alpha-N-arabinofuranosidase.
 
   
 0.682
Oter_3210
PFAM: protein of unknown function DUF303 acetylesterase putative; glycoside hydrolase family 2 sugar binding; KEGG: sus:Acid_2104 protein of unknown function DUF303, acetylesterase putative.
 
     0.655
Oter_0327
Alpha-N-arabinofuranosidase; KEGG: scl:sce4592 alpha-L-arabinofuranosidase precursor; PFAM: glycoside hydrolase family 62; Immunoglobulin I-set domain protein; SMART: Immunoglobulin subtype.
 
 
   0.652
Oter_4327
PFAM: lipolytic protein G-D-S-L family; KEGG: sde:Sde_2370 electron transport complex, RnfABCDGE type, D subunit.
  
     0.608
Oter_2117
PFAM: glycoside hydrolase family 11; KEGG: afm:AFUA_3G00320 endo-1,4-beta-xylanase (XlnA), putative; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
 
   
 0.551
Oter_3220
Alpha-galactosidase; PFAM: glycoside hydrolase clan GH-D; Ig family protein; KEGG: bth:BT_3592 alpha-galactosidase precursor.
 
     0.537
Oter_3215
PFAM: protein of unknown function DUF1593; KEGG: ccr:CC_0505 hypothetical protein.
 
   
 0.510
Oter_3212
KEGG: sus:Acid_2100 alpha-N-arabinofuranosidase; PFAM: Carbohydrate-binding CenC domain protein; SMART: alpha-L-arabinofuranosidase domain protein.
 
   
 0.473
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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