STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_3244PFAM: O-antigen polymerase; KEGG: pla:Plav_1908 O-antigen polymerase. (501 aa)    
Predicted Functional Partners:
Oter_3443
TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; KEGG: cpy:Cphy_3542 undecaprenyl-phosphate glucose phosphotransferase.
  
  
 0.837
Oter_3763
TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; KEGG: mxa:MXAN_2922 bacterial sugar transferase.
  
  
 0.837
Oter_3243
TIGRFAM: capsular exopolysaccharide family; KEGG: dol:Dole_1657 non-specific protein-tyrosine kinase.
  
  
 0.803
Oter_3245
PFAM: ABC-2 type transporter; KEGG: sat:SYN_02655 ABC-type polysaccharide/polyol phosphate export systems, permease component.
  
  
 0.786
Oter_3242
PFAM: polysaccharide export protein; KEGG: pol:Bpro_1877 polysaccharide export protein.
  
  
 0.701
Oter_3246
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: fps:FP1269 probable ABC-type polysaccharide/polyol phosphate transport system, ATPase component.
  
  
 0.657
Oter_3241
KEGG: nha:Nham_3412 hypothetical protein.
       0.594
Oter_3973
PFAM: glycosyl transferase family 2; glycosyl transferase group 1; KEGG: bch:Bcen2424_0878 glycosyl transferase, family 2.
  
  
 0.521
Oter_1597
Capsular exopolysaccharide family; KEGG: vco:VC0395_A0461 putative exopolysaccharide biosynthesis protein; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein.
  
  
 0.400
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.