STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_3274TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: sucrose-6F-phosphate phosphohydrolase; Amylo-alpha-16-glucosidase; Haloacid dehalogenase domain protein hydrolase type 3; KEGG: rca:Rcas_2516 glycogen debranching enzyme-like protein. (698 aa)    
Predicted Functional Partners:
Oter_3275
PFAM: glycosyl transferase group 1; KEGG: atc:AGR_C_1178 hypothetical protein.
 
 0.924
Oter_3273
PFAM: PfkB domain protein; KEGG: sus:Acid_2069 PfkB domain protein.
 
  
 0.873
Oter_4043
Glycogen/starch/alpha-glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
  
 
 0.678
Oter_4427
KEGG: pca:Pcar_1731 glucan phosphorylase; TIGRFAM: alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35.
  
 
 0.678
pgi
PFAM: phosphoglucose isomerase (PGI); KEGG: gme:Gmet_2458 glucose-6-phosphate isomerase; Belongs to the GPI family.
  
  
 0.568
Oter_3973
PFAM: glycosyl transferase family 2; glycosyl transferase group 1; KEGG: bch:Bcen2424_0878 glycosyl transferase, family 2.
  
 
 0.554
Oter_4425
PFAM: glycoside hydrolase family 13 domain protein; KEGG: ade:Adeh_3736 glycoside hydrolase, family 13-like.
 
  
 0.517
Oter_3366
PFAM: transferase hexapeptide repeat containing protein; Nucleotidyl transferase; KEGG: ter:Tery_4395 glucose-1-phosphate adenylyltransferase; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.
 
   
 0.506
Oter_3978
PFAM: Nucleotidyl transferase; KEGG: sus:Acid_0419 nucleotidyl transferase.
  
  
 0.488
Oter_0342
Alpha amylase all-beta; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; alpha amylase all-beta; SMART: alpha amylase catalytic sub domain; KEGG: sfu:Sfum_0359 alpha amylase, catalytic region.
  
  
 0.441
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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