STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_3310Hypothetical protein. (42 aa)    
Predicted Functional Partners:
Oter_3311
TIGRFAM: sodium ion-translocating decarboxylase, beta subunit; PFAM: Na+transporting methylmalonyl-CoA/oxaloacetate decarboxylase beta subunit; KEGG: bth:BT_4415 putative decarboxylase beta subunit.
       0.651
Oter_3312
Hypothetical protein.
       0.651
Oter_3313
PFAM: sodium pump decarboxylase gamma subunit; KEGG: rru:Rru_A0050 hypothetical protein.
       0.560
Oter_3314
KEGG: amt:Amet_4535 sodium ion-translocating decarboxylase, beta subunit; TIGRFAM: sodium ion-translocating decarboxylase, beta subunit; PFAM: Na+transporting methylmalonyl-CoA/oxaloacetate decarboxylase beta subunit.
       0.546
Oter_3309
PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: rru:Rru_A0049 biotin/lipoyl attachment.
       0.499
Oter_3307
Propionyl-CoA carboxylase; PFAM: carboxyl transferase; KEGG: rru:Rru_A0051 carboxyl transferase.
       0.476
Oter_3308
KEGG: rru:Rru_A0050 hypothetical protein.
       0.476
Oter_3306
TIGRFAM: methylmalonyl-CoA epimerase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pgi:PG1613 glyoxalase family protein.
       0.412
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.