STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_3347Putative RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: aba:Acid345_4314 putative sigma factor, ECF subfamily. (446 aa)    
Predicted Functional Partners:
Oter_3346
PFAM: DGPFAETKE family protein; KEGG: aba:Acid345_4313 DGPFAETKE domain protein.
 
     0.880
Oter_3338
PFAM: DGPFAETKE family protein; KEGG: fjo:Fjoh_0273 DGPFAETKE family protein.
 
     0.801
Oter_2534
PFAM: DGPFAETKE family protein; KEGG: sus:Acid_2429 DGPFAETKE family protein.
 
     0.800
Oter_1120
PFAM: protein of unknown function DUF899 thioredoxin family protein; KEGG: oih:OB0913 hypothetical protein.
 
    0.637
Oter_0352
PFAM: bifunctional deaminase-reductase domain protein; KEGG: rme:Rmet_4484 bifunctional deaminase-reductase-like protein.
  
     0.469
Oter_2260
PFAM: bifunctional deaminase-reductase domain protein; KEGG: pde:Pden_4363 bifunctional deaminase-reductase domain protein.
  
     0.460
Oter_4102
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sil:SPO3081 glyoxalase family protein.
 
     0.451
Oter_2280
PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: rfr:Rfer_2543 hypothetical protein.
 
     0.430
Oter_3033
KEGG: chu:CHU_1733 hypothetical protein.
  
     0.422
Oter_1314
PFAM: protein of unknown function DUF1428; KEGG: pla:Plav_1072 protein of unknown function DUF1428.
 
     0.408
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.