STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_3462PFAM: oxidoreductase domain protein; KEGG: sus:Acid_4818 oxidoreductase domain protein. (459 aa)    
Predicted Functional Partners:
Oter_2975
PFAM: oxidoreductase domain protein; KEGG: pdi:BDI_3844 dehydrogenase, putative exo-alpha-sialidase.
  
     0.772
Oter_3358
PFAM: protein of unknown function DUF1080; KEGG: sru:SRU_2533 probable secreted glycosyl hydrolase.
  
     0.770
Oter_3566
PFAM: protein of unknown function DUF1080; KEGG: sru:SRU_2533 probable secreted glycosyl hydrolase.
  
     0.769
Oter_0347
PFAM: protein of unknown function DUF1080; KEGG: rba:RB9196 probable secreted glycosyl hydrolase.
  
     0.768
Oter_3044
PFAM: protein of unknown function DUF1080; KEGG: sus:Acid_2605 protein of unknown function DUF1080.
  
     0.757
Oter_0153
PFAM: protein of unknown function DUF1080; KEGG: sus:Acid_2457 protein of unknown function DUF1080.
  
     0.755
Oter_1169
KEGG: pdi:BDI_1270 hypothetical protein.
  
     0.671
Oter_4324
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sus:Acid_5045 xylose isomerase domain protein TIM barrel.
  
    0.652
Oter_3285
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: aba:Acid345_1695 sugar phosphate isomerases/epimerases.
  
    0.612
Oter_1779
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: pdi:BDI_3562 putative dehydrogenase.
  
     0.597
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.