STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_3635PFAM: chalcone and stilbene synthase domain protein; FAE1/Type III polyketide synthase-like protein; KEGG: pna:Pnap_2676 chalcone and stilbene synthases domain protein. (344 aa)    
Predicted Functional Partners:
Oter_3634
KEGG: scl:sce2184 putative electron transfer oxidoreductase.
 
  
 0.906
Oter_1961
Beta-ketoacyl synthase; PFAM: AMP-dependent synthetase and ligase; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Male sterility domain; KR domain protein; Beta-ketoacyl synthase; KEGG: ava:Ava_4108 beta-ketoacyl synthase.
  
 
 0.817
Oter_3468
PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: sus:Acid_7729 amine oxidase.
  
 
 
 0.792
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.791
lig
DNA ligase I, ATP-dependent Dnl1; DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair.
 
 
 0.785
Oter_1328
PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: xcv:XCV3541 amine oxidase precursor.
    
 
 0.758
Oter_3180
PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: sru:SRU_1941 Ysh1p: subunit of polyadenylation factor I, putative.
    
 0.741
Oter_0880
PFAM: H+transporting two-sector ATPase C subunit; KEGG: sat:SYN_02965 ATP synthase C chain.
   
 0.735
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
  0.723
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
  0.715
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.