STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_3669PFAM: regulatory protein ArsR; KEGG: sat:SYN_00347 transcriptional regulator, ArsR family. (125 aa)    
Predicted Functional Partners:
Oter_3670
TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: sus:Acid_4409 bile acid:sodium symporter.
  
  
 0.761
Oter_3671
PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: cte:CT1725 arsenate reductase.
 
  
 0.612
Oter_3668
TIGRFAM: TonB-dependent copper receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pfo:Pfl_0596 TonB-dependent copper receptor.
       0.427
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.