STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_3695PFAM: periplasmic binding protein; KEGG: rsp:RSP_2403 ABC cobalamin/Fe3+-siderophore transporter, periplasmic substrate-binding subunit. (297 aa)    
Predicted Functional Partners:
Oter_3694
PFAM: transport system permease protein; KEGG: pde:Pden_4384 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.998
Oter_3693
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pde:Pden_4385 ABC transporter related.
 
 
 0.997
Oter_3696
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: mca:MCA1957 TonB-dependent receptor, putative.
 
  
 0.891
Oter_2875
PFAM: iron permease FTR1; KEGG: rpc:RPC_1954 iron permease FTR1.
   
  
 0.793
Oter_0866
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: mmr:Mmar10_2735 TonB-dependent receptor.
  
  
 0.790
cobQ
Cobyric acid synthase CobQ; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.
  
  
 0.648
Oter_3589
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dac:Daci_4800 binding-protein-dependent transport systems inner membrane component.
   
  
 0.549
Oter_3654
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
     
 0.474
Oter_3615
ABC-type Fe3+ transport system periplasmic component-like protein; KEGG: ape:APE_1728 ABC transporter, substrate binding protein.
  
  
 0.448
Oter_1973
MCP methyltransferase, CheR-type; TIGRFAM: amino acid adenylation domain protein; PFAM: MCP methyltransferase CheR-type; AMP-dependent synthetase and ligase; Thioesterase; phosphopantetheine-binding; Methyltransferase type 11; Methyltransferase type 12; KEGG: ckl:CKL_2354 predicted nonribosomal peptide synthetase; Belongs to the ATP-dependent AMP-binding enzyme family.
  
  
 0.445
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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