STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_3737KEGG: ppu:PP_3423 type II secretion pathway protein XcpT. (212 aa)    
Predicted Functional Partners:
Oter_1603
TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: gbe:GbCGDNIH1_1767 general secretion pathway protein G.
  
  
  0.968
Oter_3736
KEGG: rba:RB8199 hypothetical protein.
 
     0.861
Oter_3735
Hypothetical protein; KEGG: xom:XOO_0774 general secretion pathway protein H.
       0.773
Oter_3733
KEGG: cya:CYA_0198 PddD domain protein.
  
  
 0.675
Oter_3732
Hypothetical protein; KEGG: amt:Amet_3206 FMN-dependent alpha-hydroxy acid dehydrogenase.
       0.655
Oter_3734
Hypothetical protein.
       0.655
Oter_1619
PFAM: type II secretion system protein; KEGG: mta:Moth_1552 type II secretion system protein.
 
  
 0.573
Oter_3086
PFAM: type II secretion system protein; KEGG: dge:Dgeo_0757 type II secretion system protein.
 
  
 0.568
Oter_3085
PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: rba:RB12774 type IV fimbrial assembly protein PilB.
 
 
 0.559
Oter_3083
PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: mxa:MXAN_2513 general secretory pathway protein E.
 
 
 0.552
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.