STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_3867PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: sfu:Sfum_2005 protease Do. (433 aa)    
Predicted Functional Partners:
Oter_3866
SMART: PDZ/DHR/GLGF domain protein; KEGG: mxa:MXAN_2995 peptidase, S1C (protease Do) subfamily.
 
    
0.795
Oter_3865
TIGRFAM: riboflavin synthase, alpha subunit; PFAM: Lumazine-binding protein; KEGG: bcl:ABC1811 riboflavin synthase subunit alpha.
  
    0.784
Oter_3864
TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: afw:Anae109_1500 phage SPO1 DNA polymerase-related protein.
  
    0.774
Oter_3863
PFAM: periplasmic glucan biosynthesis protein MdoG; KEGG: reh:H16_B1229 periplasmic glucan biosynthesis protein.
       0.773
leuS
TIGRFAM: leucyl-tRNA synthetase; KEGG: gtn:GTNG_2742 leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
 
    0.741
Oter_1429
PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: scl:sce5713 cell division cycle protein 48-related protein; Belongs to the AAA ATPase family.
   
 0.662
Oter_3862
Hypothetical protein.
       0.612
Oter_0776
KEGG: bra:BRADO5752 putative sensor histidine kinase with multiple PAS/PAC and a response regulator receiver domain; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; GAF domain protein.
  
  
 0.486
Oter_1811
Multi-sensor hybrid histidine kinase; KEGG: rso:RS05068 probable composite two-component transcriptional regulatory (sensor histidine kinase and response regulator hybrid) transcription regulator protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
  
  
 0.475
Oter_2707
PFAM: Ankyrin; KEGG: rfe:RF_0381 guanosine polyphosphate pyrophosphohydrolase/synthetase homolog.
  
 0.473
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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