STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_3905PFAM: Biopolymer transport protein ExbD/TolR; KEGG: mca:MCA0632 biopolymer transport protein, ExbD/TolR family. (133 aa)    
Predicted Functional Partners:
Oter_3906
PFAM: MotA/TolQ/ExbB proton channel; KEGG: mpt:Mpe_A2483 putative biopolymer transport ExbB-like transmembrane protein.
 
 
 0.972
Oter_2347
PFAM: MotA/TolQ/ExbB proton channel; KEGG: fnu:FN1312 biopolymer transport ExbB protein.
 
 
 0.871
Oter_0242
PFAM: MotA/TolQ/ExbB proton channel; KEGG: pcu:pc1547 putative biopolymer transport protein ExbB.
 
 
 0.846
Oter_3325
PFAM: MotA/TolQ/ExbB proton channel; KEGG: dde:Dde_3629 TolQ protein.
 
 
 0.699
Oter_2345
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: amr:AM1_B0121 biopolymer transport protein ExbD/TolR, putative.
  
     0.686
Oter_0385
TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: vco:VC0395_0327 tonB1 protein.
 
 
 0.595
Oter_1093
TIGRFAM: TonB family protein; KEGG: sus:Acid_6018 TonB family protein.
 
 
 0.588
Oter_1508
TIGRFAM: TonB family protein; KEGG: scl:sce7062 TonB-dependent receptor.
 
 
 0.585
Oter_0080
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: TonB family protein; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: rrs:RoseRS_1760 RNA polymerase, sigma-24 subunit, ECF subfamily.
  
 
 0.577
Oter_1009
TIGRFAM: TonB family protein; KEGG: sus:Acid_4819 TonB family protein.
 
 
 0.562
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.