STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_3967PFAM: outer membrane efflux protein; KEGG: afw:Anae109_0891 outer membrane efflux protein. (547 aa)    
Predicted Functional Partners:
Oter_3966
PFAM: peptidase M50; KEGG: rba:RB10479 conserved hypothetical protein-putative transmembrane protein.
  
 
 0.870
Oter_0921
PFAM: outer membrane efflux protein; KEGG: gsu:GSU0950 outer membrane efflux protein.
  
     0.707
Oter_3968
KEGG: sde:Sde_3236 GAF domain protein.
  
   0.602
Oter_3969
Hypothetical protein; KEGG: pth:PTH_2682 membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
   0.577
Oter_1637
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: cte:CT1348 membrane fusion efflux protein, putative; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.529
Oter_3965
PFAM: regulatory protein LuxR; KEGG: sil:SPO1488 transcriptional regulator, LuxR family.
       0.529
Oter_1417
PFAM: permease YjgP/YjgQ family protein; KEGG: gur:Gura_3734 permease YjgP/YjgQ family protein.
  
     0.528
Oter_2204
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: tbd:Tbd_1581 secretion protein HlyD.
 
 
 0.522
Oter_2021
PFAM: permease YjgP/YjgQ family protein; KEGG: sus:Acid_5821 permease YjgP/YjgQ family protein.
  
     0.491
Oter_0916
PFAM: secretion protein HlyD family protein; KEGG: gsu:GSU2823 HlyD family secretion protein.
  
 
 0.450
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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