STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_3979KEGG: sus:Acid_0420 sugar isomerase family protein. (199 aa)    
Predicted Functional Partners:
Oter_3977
PFAM: GHMP kinase; GHMP kinase domain protein; KEGG: sus:Acid_0418 GHMP kinase.
 
 
 0.996
Oter_3980
TIGRFAM: histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: sus:Acid_0421 histidinol-phosphate phosphatase family protein.
 
  
 0.974
gmhA
Phosphoheptose isomerase; Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate; Belongs to the SIS family. GmhA subfamily.
  
  
 
0.927
Oter_3978
PFAM: Nucleotidyl transferase; KEGG: sus:Acid_0419 nucleotidyl transferase.
 
  
 0.926
Oter_3981
TIGRFAM: transaldolase; PFAM: Transaldolase; KEGG: sus:Acid_0551 putative translaldolase.
 
     0.914
Oter_0022
TIGRFAM: cytidyltransferase-related domain protein; PFAM: cytidylyltransferase; KEGG: pfu:PF1116 glycerol-3-phosphate cytidyltransferase.
    
  0.906
Oter_0452
Hydrolase, HAD-superfamily, subfamily IIIA; TIGRFAM: histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: dvl:Dvul_1940 histidinol-phosphate phosphatase family protein; Belongs to the gmhB family.
 
  
 0.877
Oter_3975
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: sus:Acid_0574 NAD-dependent epimerase/dehydratase.
 
  
 0.872
Oter_2916
KEGG: tte:TTE0762 phosphoheptose isomerase.
  
     0.747
Oter_3982
KEGG: hau:Haur_3849 hypothetical protein.
 
     0.661
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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