STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_4013KEGG: syg:sync_0157 hypothetical protein. (409 aa)    
Predicted Functional Partners:
Oter_2539
PFAM: Monogalactosyldiacylglycerol synthase; KEGG: bur:Bcep18194_B0550 UDP-N-acetylglucosamine/LPS N-acetylglucosamine transferase-like.
  
  
 
0.929
Oter_0790
PFAM: glycosyl transferase group 1; KEGG: hch:HCH_03962 glycosyltransferase.
    
 0.900
Oter_1332
KEGG: abo:ABO_1607 hypothetical protein.
     
  0.900
murB-2
UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation.
  
  
 0.894
murD
UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family.
  
  
 0.824
Oter_2639
Polypeptide-transport-associated domain protein FtsQ-type; Essential cell division protein.
  
  
 0.823
Oter_2630
UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein.
  
  
 0.798
Oter_4014
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: msm:MSMEG_1114 short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.773
Oter_3572
PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: csa:Csal_1535 UDP-N-acetylmuramate.
  
  
 0.726
Oter_4015
PFAM: Beta-ketoacyl synthase; KEGG: pmy:Pmen_2470 3-oxoacyl-(acyl carrier protein) synthase I; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
     
 0.713
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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