STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_4062PFAM: permease; KEGG: pca:Pcar_0049 predicted permease. (377 aa)    
Predicted Functional Partners:
Oter_4061
TIGRFAM: redox-active disulfide protein 2; KEGG: pca:Pcar_0185 putative thioredoxin.
 
  
 0.945
Oter_0762
PFAM: NAD-dependent epimerase/dehydratase; KEGG: bbr:BB4974 hypothetical protein.
   
    0.699
Oter_4063
PFAM: regulatory protein ArsR; KEGG: dde:Dde_3721 putative transcriptional regulator, ArsR family.
  
  
 0.639
Oter_4057
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Carboxymuconolactone decarboxylase; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: gur:Gura_0466 RNA polymerase, sigma-24 subunit, ECF subfamily.
       0.611
Oter_4058
PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: ade:Adeh_1026 cytochrome c biogenesis protein, transmembrane region.
       0.601
Oter_4059
PFAM: Thioredoxin domain; KEGG: afw:Anae109_3645 thioredoxin domain.
     
 0.598
Oter_4060
PFAM: NADP oxidoreductase coenzyme F420-dependent; KEGG: mth:MTH897 pyrroline-5-carboxylate reductase.
       0.592
Oter_1019
Nitrite reductase (NO-forming); PFAM: blue (type 1) copper domain protein; multicopper oxidase type 1; multicopper oxidase type 2; multicopper oxidase type 3; KEGG: ace:Acel_0503 multicopper oxidase, type 3.
  
  
 0.433
Oter_4395
TIGRFAM: copper-resistance protein, CopA family; PFAM: multicopper oxidase type 1; multicopper oxidase type 2; multicopper oxidase type 3; KEGG: afw:Anae109_4267 copper-resistance protein, CopA family.
  
  
 0.433
trmB
Putative methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
   
    0.428
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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