STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_4100TIGRFAM: TonB family protein; KEGG: sus:Acid_4819 TonB family protein. (234 aa)    
Predicted Functional Partners:
Oter_0866
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: mmr:Mmar10_2735 TonB-dependent receptor.
  
 
 0.907
Oter_1754
PFAM: TonB-dependent receptor plug; KEGG: ajs:Ajs_1523 TonB-dependent siderophore receptor.
 
 
 0.780
Oter_3377
PFAM: TonB-dependent receptor plug; KEGG: pcr:Pcryo_1281 TonB-dependent siderophore receptor.
  
   0.682
Oter_1093
TIGRFAM: TonB family protein; KEGG: sus:Acid_6018 TonB family protein.
  
     0.680
Oter_1991
PFAM: TonB-dependent receptor plug; KEGG: ajs:Ajs_1523 TonB-dependent siderophore receptor.
  
   0.678
Oter_2317
PFAM: TonB-dependent receptor plug; KEGG: ajs:Ajs_1523 TonB-dependent siderophore receptor.
  
   0.678
Oter_3199
PFAM: TonB-dependent receptor plug; KEGG: reh:H16_B0785 outer membrane receptor, TonB-dependent.
  
   0.678
Oter_2928
PFAM: TonB-dependent receptor plug; KEGG: ajs:Ajs_1523 TonB-dependent siderophore receptor.
  
   0.676
Oter_1002
TIGRFAM: TonB family protein; KEGG: vvy:VVA0424 periplasmic protein TonB1.
  
     0.671
Oter_2495
PFAM: TonB-dependent receptor plug; KEGG: ajs:Ajs_1523 TonB-dependent siderophore receptor.
  
   0.669
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.