STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_4167Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: amr:AM1_3714 ferric uptake regulation protein; Belongs to the Fur family. (151 aa)    
Predicted Functional Partners:
Oter_4168
KEGG: dge:Dgeo_0474 FeS assembly ATPase SufC; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase.
     
 0.612
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.588
Oter_0894
PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: syn:sll1502 NADH-dependent glutamate synthase large subunit.
     
 0.512
Oter_3587
PFAM: regulatory protein MarR; iron dependent repressor; FeoA family protein; KEGG: cgt:cgR_0157 hypothetical protein.
  
  
 0.480
Oter_4169
TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; KEGG: rxy:Rxyl_0170 FeS assembly protein SufB.
     
 0.479
Oter_2791
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: pca:Pcar_1952 negative regulator of ferric uptake; Belongs to the Fur family.
  
     0.462
Oter_4035
Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: sus:Acid_5272 transcriptional regulator, ArsR family.
 
  
 0.408
Oter_4170
TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein; KEGG: rxy:Rxyl_0168 FeS assembly protein SufD.
     
 0.405
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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