STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_4173KEGG: mjl:Mjls_3499 putative conserved integral membrane protein. (279 aa)    
Predicted Functional Partners:
Oter_1977
PFAM: Rhodanese domain protein; KEGG: rxy:Rxyl_2352 thiosulfate sulfurtransferase.
    
  0.812
Oter_0932
PFAM: aminotransferase class I and II; KEGG: ppd:Ppro_1998 aminotransferase, class I and II.
     
  0.800
Oter_1496
PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: lbl:LBL_0043 Cys/Met metabolism PLP-dependent protein.
     
  0.800
Oter_2878
Cystathionine gamma-synthase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: sth:STH832 cystathionine gamma-lyase.
     
  0.800
Oter_3688
KEGG: mbn:Mboo_1994 O-acetylhomoserine/O-acetylserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein.
     
  0.800
ahcY
Adenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.
     
  0.800
Oter_4332
PFAM: homocysteine S-methyltransferase; KEGG: sus:Acid_2673 homocysteine S-methyltransferase.
    
  0.800
Oter_4172
PFAM: oxidoreductase domain protein; KEGG: sus:Acid_5325 oxidoreductase domain protein.
       0.762
Oter_4174
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma factor ECF family protein; KEGG: rba:RB621 hypothetical protein-putative sigma factor.
       0.476
Oter_4171
TIGRFAM: FeS assembly SUF system protein SufT; PFAM: protein of unknown function DUF59; KEGG: mxa:MXAN_1158 hypothetical protein.
       0.465
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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