Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Oter_4215 | Oter_4216 | Oter_4215 | Oter_4216 | UreE urease accessory domain protein; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. | PFAM: SEC-C motif domain protein; KEGG: dde:Dde_0205 sec-C motif domain protein. | 0.404 |
Oter_4215 | ureF | Oter_4215 | Oter_4214 | UreE urease accessory domain protein; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. | Urease accessory protein UreF; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter. | 0.991 |
Oter_4216 | Oter_4215 | Oter_4216 | Oter_4215 | PFAM: SEC-C motif domain protein; KEGG: dde:Dde_0205 sec-C motif domain protein. | UreE urease accessory domain protein; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. | 0.404 |
Oter_4216 | Oter_4217 | Oter_4216 | Oter_4217 | PFAM: SEC-C motif domain protein; KEGG: dde:Dde_0205 sec-C motif domain protein. | Hypothetical protein. | 0.486 |
Oter_4216 | ureF | Oter_4216 | Oter_4214 | PFAM: SEC-C motif domain protein; KEGG: dde:Dde_0205 sec-C motif domain protein. | Urease accessory protein UreF; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter. | 0.404 |
Oter_4217 | Oter_4216 | Oter_4217 | Oter_4216 | Hypothetical protein. | PFAM: SEC-C motif domain protein; KEGG: dde:Dde_0205 sec-C motif domain protein. | 0.486 |
ureF | Oter_4215 | Oter_4214 | Oter_4215 | Urease accessory protein UreF; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter. | UreE urease accessory domain protein; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. | 0.991 |
ureF | Oter_4216 | Oter_4214 | Oter_4216 | Urease accessory protein UreF; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter. | PFAM: SEC-C motif domain protein; KEGG: dde:Dde_0205 sec-C motif domain protein. | 0.404 |