STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_4259PFAM: PfkB domain protein; KEGG: scl:sce5155 put. 2-dehydro-3-deoxygluconokinase. (365 aa)    
Predicted Functional Partners:
Oter_4262
TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase; KEGG: msm:MSMEG_3788 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase.
 
 0.997
Oter_4342
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
  
 0.901
Oter_4264
TIGRFAM: 2-deoxy-D-gluconate 3-dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ent:Ent638_3295 2-deoxy-D-gluconate 3-dehydrogenase.
 
 0.866
Oter_3605
PFAM: ribulose-phosphate 3-epimerase; KEGG: spk:MGAS9429_Spy0226 ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
  
 0.838
Oter_4448
PFAM: ribulose-phosphate 3-epimerase; KEGG: gka:GK1178 ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
  
 0.838
ispD
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D- erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP).
  
 0.817
Oter_4331
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: fjo:Fjoh_1994 short-chain dehydrogenase/reductase SDR.
  
 0.815
Oter_1383
PFAM: carbohydrate kinase FGGY; KEGG: lma:LmjF36.0060 L-ribulokinase, putative.
    
 0.807
Oter_3202
RbsD or FucU transport; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose.
  
  
 0.698
uxaC
PFAM: Glucuronate isomerase; KEGG: sus:Acid_5330 glucuronate isomerase.
 
   
 0.668
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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