STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kduI4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate; Belongs to the KduI family. (274 aa)    
Predicted Functional Partners:
Oter_4264
TIGRFAM: 2-deoxy-D-gluconate 3-dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ent:Ent638_3295 2-deoxy-D-gluconate 3-dehydrogenase.
 
 0.989
Oter_4331
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: fjo:Fjoh_1994 short-chain dehydrogenase/reductase SDR.
 
 0.935
Oter_1331
PFAM: WD40 domain protein beta Propeller; KEGG: bvu:BVU_0165 hypothetical protein.
     
 0.901
Oter_4262
TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase; KEGG: msm:MSMEG_3788 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase.
  
 0.857
Oter_4270
PFAM: glycoside hydrolase family 28; glycosyl hydrolase family 88; KEGG: sus:Acid_7773 glycoside hydrolase, family 28; Belongs to the glycosyl hydrolase 28 family.
 
   
 0.812
uxaC
PFAM: Glucuronate isomerase; KEGG: sus:Acid_5330 glucuronate isomerase.
 
  
 0.791
Oter_1360
PFAM: glycosyl hydrolase family 88; KEGG: bvu:BVU_0151 conserved hypothetical protein, putative cytoplasmic protein.
 
   
 0.781
Oter_4342
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
  
 0.745
Oter_4265
KEGG: fjo:Fjoh_4187 hypothetical protein.
 
   
 0.730
Oter_0316
PFAM: glycosyl hydrolase family 88; KEGG: bth:BT_2913 unsaturated glucuronylhydrolase.
 
   
 0.723
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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