STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_4310Transcriptional regulator, LacI family; PFAM: regulatory protein LacI; KEGG: rrs:RoseRS_2559 alanine racemase. (369 aa)    
Predicted Functional Partners:
Oter_4311
PFAM: regulatory protein LacI; KEGG: tte:TTE0797 transcriptional regulator.
 
    
0.777
Oter_0894
PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: syn:sll1502 NADH-dependent glutamate synthase large subunit.
    
 
 0.775
Oter_1754
PFAM: TonB-dependent receptor plug; KEGG: ajs:Ajs_1523 TonB-dependent siderophore receptor.
  
     0.707
Oter_3377
PFAM: TonB-dependent receptor plug; KEGG: pcr:Pcryo_1281 TonB-dependent siderophore receptor.
  
     0.692
Oter_2495
PFAM: TonB-dependent receptor plug; KEGG: ajs:Ajs_1523 TonB-dependent siderophore receptor.
  
     0.679
Oter_1794
PFAM: TonB-dependent receptor plug; KEGG: nmu:Nmul_A1260 TonB-dependent siderophore receptor.
  
     0.673
Oter_3199
PFAM: TonB-dependent receptor plug; KEGG: reh:H16_B0785 outer membrane receptor, TonB-dependent.
  
     0.664
Oter_1756
Transcriptional regulator, LacI family; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: dge:Dgeo_2697 transcriptional regulator, LacI family.
  
     0.661
Oter_2978
Hypothetical protein; KEGG: sus:Acid_4050 peptidase-like protein.
  
     0.661
Oter_1755
PFAM: TonB-dependent receptor plug; KEGG: ana:alr2596 ferrichrome-iron receptor.
  
     0.660
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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