STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_4333PFAM: amidohydrolase; Amidohydrolase 3; KEGG: mta:Moth_0462 amidohydrolase. (424 aa)    
Predicted Functional Partners:
Oter_4335
PFAM: methylenetetrahydrofolate reductase; KEGG: sat:SYN_02872 methylenetetrahydrofolate reductase.
 
     0.608
Oter_4332
PFAM: homocysteine S-methyltransferase; KEGG: sus:Acid_2673 homocysteine S-methyltransferase.
       0.572
Oter_4334
PFAM: dihydropteroate synthase DHPS; KEGG: mta:Moth_2115 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase.
       0.543
Oter_2907
PFAM: peptidase M28; KEGG: sus:Acid_2797 peptidase M28.
  
   
 0.463
Oter_2666
PFAM: NAD-dependent epimerase/dehydratase; domain of unknown function DUF1731; KEGG: fal:FRAAL5153 putative NAD dependent epimerase/dehydratase family.
  
    0.428
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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