STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_4389PFAM: protein of unknown function DUF305; KEGG: tbd:Tbd_1313 hypothetical protein. (185 aa)    
Predicted Functional Partners:
Oter_4397
PFAM: protein of unknown function DUF305; KEGG: sen:SACE_5643 putative lipoprotein.
  
     0.775
Oter_4392
PFAM: protein of unknown function DUF326; KEGG: azo:azo1773 hypothetical protein.
 
     0.570
Oter_4390
KEGG: net:Neut_1658 hypothetical protein.
       0.536
Oter_4391
Glucose/sorbosone dehydrogenase-like protein; KEGG: ckl:CKL_1484 hypothetical protein.
       0.510
Oter_0066
PFAM: cyclase/dehydrase; KEGG: ava:Ava_4497 streptomyces cyclase/dehydrase.
  
     0.493
Oter_1977
PFAM: Rhodanese domain protein; KEGG: rxy:Rxyl_2352 thiosulfate sulfurtransferase.
  
     0.413
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.