STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_4418TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: psa:PST_1030 sigma54 modulation protein. (123 aa)    
Predicted Functional Partners:
rpsQ
Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
  
 
   0.800
rplU
Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
 
   0.799
rpsL
Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.
  
 
 
 0.794
rpsU
PFAM: ribosomal protein S21; KEGG: cfe:CF0681 30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
   
 
 0.784
rpsI
PFAM: ribosomal protein S9; KEGG: mxa:MXAN_1994 ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
   
 
 0.776
rplI
Ribosomal protein L9; Binds to the 23S rRNA.
  
   0.775
rpmA
PFAM: ribosomal protein L27; KEGG: plu:plu4541 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
   
 
 0.774
rpmH
PFAM: ribosomal protein L34; KEGG: dol:Dole_0099 ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.
   
 
 0.773
rpsE
Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
    
 
 0.771
rpmC
PFAM: ribosomal protein L29; KEGG: gka:GK0114 50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.
    
 
 0.771
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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