STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_4535PFAM: Carbohydrate binding family 6; KEGG: sus:Acid_4012 hypothetical protein. (898 aa)    
Predicted Functional Partners:
Oter_0974
KEGG: rba:RB9146 hypothetical protein.
  
     0.768
Oter_1998
KEGG: sus:Acid_7648 hypothetical protein.
  
     0.762
Oter_0134
KEGG: rba:RB9146 hypothetical protein.
  
     0.761
Oter_4340
KEGG: sus:Acid_2672 hypothetical protein.
  
     0.751
Oter_3738
PFAM: Cupin 2 conserved barrel domain protein; KEGG: sus:Acid_4750 cupin 2, conserved barrel domain protein.
  
     0.714
Oter_2197
KEGG: sus:Acid_3124 hypothetical protein.
  
    0.708
Oter_3213
KEGG: sus:Acid_6268 hypothetical protein.
  
     0.705
Oter_2928
PFAM: TonB-dependent receptor plug; KEGG: ajs:Ajs_1523 TonB-dependent siderophore receptor.
  
     0.701
Oter_2901
PFAM: TonB-dependent receptor plug; KEGG: nmu:Nmul_A1260 TonB-dependent siderophore receptor.
  
     0.700
Oter_3234
PFAM: TonB-dependent receptor plug; KEGG: ana:all2610 ferrichrome-iron receptor.
  
    0.700
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.