STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnec_0272Hypothetical protein. (67 aa)    
Predicted Functional Partners:
Pnec_0270
KEGG: gdi:GDI2996 hypothetical protein.
       0.741
Pnec_0271
KEGG: pnu:Pnuc_0315 hypothetical protein.
       0.741
Pnec_0273
Hypothetical protein.
       0.689
Pnec_0269
KEGG: pnu:Pnuc_0248 hypothetical protein.
       0.609
Pnec_0268
KEGG: pnu:Pnuc_0247 hypothetical protein.
       0.552
Pnec_0266
PFAM: phosphoribosyltransferase; KEGG: pnu:Pnuc_0245 phosphoribosyltransferase.
       0.468
pyrB
TIGRFAM: aspartate carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; KEGG: pnu:Pnuc_0246 aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
       0.468
Pnec_0264
PFAM: protein of unknown function DUF179; KEGG: pnu:Pnuc_0243 protein of unknown function DUF179; Belongs to the UPF0301 (AlgH) family.
       0.411
Pnec_0265
Holliday junction resolvase YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family.
       0.411
Your Current Organism:
Polynucleobacter necessarius
NCBI taxonomy Id: 452638
Other names: P. necessarius STIR1, Polynucleobacter necessarius STIR1, Polynucleobacter necessarius subsp. necessarius STIR1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.