STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnec_0494KEGG: pnu:Pnuc_1464 hypothetical protein. (123 aa)    
Predicted Functional Partners:
Pnec_0493
KEGG: pnu:Pnuc_1465 DNA internalization-related competence protein ComEC/Rec2.
       0.733
Pnec_0648
PFAM: outer membrane efflux protein; KEGG: pnu:Pnuc_1302 outer membrane efflux protein.
  
     0.610
Pnec_0611
KEGG: pnu:Pnuc_1338 hypothetical protein.
  
     0.595
Pnec_0549
KEGG: pnu:Pnuc_1410 hypothetical protein.
  
     0.575
Pnec_1111
KEGG: pnu:Pnuc_1247 glycosyl transferase, family 39.
  
     0.543
Pnec_0631
KEGG: pnu:Pnuc_1315 hypothetical protein.
  
     0.509
Pnec_1136
KEGG: pnu:Pnuc_0711 AsmA family protein.
  
     0.505
Pnec_1395
KEGG: pnu:Pnuc_1531 putative lipoprotein.
  
     0.492
Pnec_0420
KEGG: pnu:Pnuc_0569 GCN5-related N-acetyltransferase.
  
     0.459
Pnec_0119
PFAM: porin Gram-negative type; KEGG: pnu:Pnuc_0120 porin, gram-negative type.
  
     0.449
Your Current Organism:
Polynucleobacter necessarius
NCBI taxonomy Id: 452638
Other names: P. necessarius STIR1, Polynucleobacter necessarius STIR1, Polynucleobacter necessarius subsp. necessarius STIR1
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