NRL protein (Neovison vison) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

NRL

Neural retina leucine zipper. (237 aa)

Predicted Functional Partners:

GUCA1B

0.995

RHO

0.854

CRX

0.819

NR2E3

0.782

OPN1SW

0.673

GNAT1

0.664

RCVRN

0.638

ENSNVIP00000016548

0.630

PDE6G

0.627

GRK7

0.615

Your Current Organism:

Neovison vison

NCBI taxonomy Id: 452646
Other names: American mink, Mustela vison, N. vison, mink

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRX	GNAT1	ENSNVIP00000014238	ENSNVIP00000000876	Cone-rod homeobox.	G protein subunit alpha transducin 1.	0.511
CRX	NR2E3	ENSNVIP00000014238	ENSNVIP00000003827	Cone-rod homeobox.	Nuclear receptor subfamily 2 group E member 3.	0.682
CRX	NRL	ENSNVIP00000014238	ENSNVIP00000000029	Cone-rod homeobox.	Neural retina leucine zipper.	0.819
CRX	OPN1SW	ENSNVIP00000014238	ENSNVIP00000000022	Cone-rod homeobox.	Opsin 1, short wave sensitive.	0.531
CRX	RCVRN	ENSNVIP00000014238	ENSNVIP00000007680	Cone-rod homeobox.	Recoverin.	0.654
CRX	RHO	ENSNVIP00000014238	ENSNVIP00000012200	Cone-rod homeobox.	Rhodopsin.	0.863
ENSNVIP00000016548	GNAT1	ENSNVIP00000016548	ENSNVIP00000000876	annotation not available	G protein subunit alpha transducin 1.	0.778
ENSNVIP00000016548	GRK7	ENSNVIP00000016548	ENSNVIP00000017587	annotation not available	G protein-coupled receptor kinase 7.	0.559
ENSNVIP00000016548	GUCA1B	ENSNVIP00000016548	ENSNVIP00000015953	annotation not available	Guanylate cyclase activator 1B.	0.898
ENSNVIP00000016548	NR2E3	ENSNVIP00000016548	ENSNVIP00000003827	annotation not available	Nuclear receptor subfamily 2 group E member 3.	0.753
ENSNVIP00000016548	NRL	ENSNVIP00000016548	ENSNVIP00000000029	annotation not available	Neural retina leucine zipper.	0.630
ENSNVIP00000016548	PDE6G	ENSNVIP00000016548	ENSNVIP00000020560	annotation not available	Phosphodiesterase 6G.	0.619
ENSNVIP00000016548	RCVRN	ENSNVIP00000016548	ENSNVIP00000007680	annotation not available	Recoverin.	0.729
ENSNVIP00000016548	RHO	ENSNVIP00000016548	ENSNVIP00000012200	annotation not available	Rhodopsin.	0.738
GNAT1	CRX	ENSNVIP00000000876	ENSNVIP00000014238	G protein subunit alpha transducin 1.	Cone-rod homeobox.	0.511
GNAT1	ENSNVIP00000016548	ENSNVIP00000000876	ENSNVIP00000016548	G protein subunit alpha transducin 1.	annotation not available	0.778
GNAT1	GRK7	ENSNVIP00000000876	ENSNVIP00000017587	G protein subunit alpha transducin 1.	G protein-coupled receptor kinase 7.	0.480
GNAT1	GUCA1B	ENSNVIP00000000876	ENSNVIP00000015953	G protein subunit alpha transducin 1.	Guanylate cyclase activator 1B.	0.875
GNAT1	NR2E3	ENSNVIP00000000876	ENSNVIP00000003827	G protein subunit alpha transducin 1.	Nuclear receptor subfamily 2 group E member 3.	0.495
GNAT1	NRL	ENSNVIP00000000876	ENSNVIP00000000029	G protein subunit alpha transducin 1.	Neural retina leucine zipper.	0.664