ZEB1 protein (Neovison vison) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

ZEB1

Zinc finger E-box binding homeobox 1. (1108 aa)

Predicted Functional Partners:

SIRT1

0.910

CTBP2

0.906

ENSNVIP00000016627

0.906

CTBP1

0.906

EP300

0.891

ZEB2

0.882

KMT5A

0.799

VIM

0.753

CDH1

0.739

SMARCA4

0.734

Your Current Organism:

Neovison vison

NCBI taxonomy Id: 452646
Other names: American mink, Mustela vison, N. vison, mink

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDH1	VIM	ENSNVIP00000010766	ENSNVIP00000002323	Cadherin 1.	Vimentin.	0.615
CDH1	ZEB1	ENSNVIP00000010766	ENSNVIP00000000339	Cadherin 1.	Zinc finger E-box binding homeobox 1.	0.739
CDH1	ZEB2	ENSNVIP00000010766	ENSNVIP00000004866	Cadherin 1.	Zinc finger E-box binding homeobox 2.	0.614
CTBP1	CTBP2	ENSNVIP00000028959	ENSNVIP00000010636	C-terminal binding protein 1.	C-terminal binding protein 2.	0.762
CTBP1	ENSNVIP00000016627	ENSNVIP00000028959	ENSNVIP00000016627	C-terminal binding protein 1.	annotation not available	0.762
CTBP1	EP300	ENSNVIP00000028959	ENSNVIP00000000696	C-terminal binding protein 1.	E1A binding protein p300.	0.726
CTBP1	ZEB1	ENSNVIP00000028959	ENSNVIP00000000339	C-terminal binding protein 1.	Zinc finger E-box binding homeobox 1.	0.906
CTBP1	ZEB2	ENSNVIP00000028959	ENSNVIP00000004866	C-terminal binding protein 1.	Zinc finger E-box binding homeobox 2.	0.876
CTBP2	CTBP1	ENSNVIP00000010636	ENSNVIP00000028959	C-terminal binding protein 2.	C-terminal binding protein 1.	0.762
CTBP2	EP300	ENSNVIP00000010636	ENSNVIP00000000696	C-terminal binding protein 2.	E1A binding protein p300.	0.726
CTBP2	ZEB1	ENSNVIP00000010636	ENSNVIP00000000339	C-terminal binding protein 2.	Zinc finger E-box binding homeobox 1.	0.906
CTBP2	ZEB2	ENSNVIP00000010636	ENSNVIP00000004866	C-terminal binding protein 2.	Zinc finger E-box binding homeobox 2.	0.876
ENSNVIP00000016627	CTBP1	ENSNVIP00000016627	ENSNVIP00000028959	annotation not available	C-terminal binding protein 1.	0.762
ENSNVIP00000016627	EP300	ENSNVIP00000016627	ENSNVIP00000000696	annotation not available	E1A binding protein p300.	0.726
ENSNVIP00000016627	ZEB1	ENSNVIP00000016627	ENSNVIP00000000339	annotation not available	Zinc finger E-box binding homeobox 1.	0.906
ENSNVIP00000016627	ZEB2	ENSNVIP00000016627	ENSNVIP00000004866	annotation not available	Zinc finger E-box binding homeobox 2.	0.876
EP300	CTBP1	ENSNVIP00000000696	ENSNVIP00000028959	E1A binding protein p300.	C-terminal binding protein 1.	0.726
EP300	CTBP2	ENSNVIP00000000696	ENSNVIP00000010636	E1A binding protein p300.	C-terminal binding protein 2.	0.726
EP300	ENSNVIP00000016627	ENSNVIP00000000696	ENSNVIP00000016627	E1A binding protein p300.	annotation not available	0.726
EP300	SIRT1	ENSNVIP00000000696	ENSNVIP00000017321	E1A binding protein p300.	Sirtuin 1.	0.936