Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CGNL1Cingulin like 1. (1295 aa)    
Predicted Functional Partners:
TJP1
Tight junction protein 1.
    
 0.917
ARHGEF2
Rho/Rac guanine nucleotide exchange factor 2.
     
 0.907
USO1
USO1 vesicle transport factor.
   
 0.734
TRAPPC8
Trafficking protein particle complex 8.
    
 0.718
RABGGTB
Rab geranylgeranyltransferase subunit beta.
    
 0.717
TRAPPC1
Trafficking protein particle complex 1.
    
 0.706
TRAPPC4
Trafficking protein particle complex 4.
    
 0.698
TMED10
Transmembrane p24 trafficking protein 10.
   
 0.654
GBF1
Golgi brefeldin A resistant guanine nucleotide exchange factor 1.
    
 0.635
ENSNVIP00000008221
annotation not available
    
 0.630
Your Current Organism:
Neovison vison
NCBI taxonomy Id: 452646
Other names: American mink, Mustela vison, N. vison, mink
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