STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATL1Atlastin GTPase 1. (558 aa)    
Predicted Functional Partners:
RTN4
Reticulon 4.
    
 
 0.801
REEP2
Receptor accessory protein 2.
   
 
 0.774
ENSNVIP00000014972
Fat storage inducing transmembrane protein 2.
      
 0.753
ENSNVIP00000028734
Receptor accessory protein 4.
    
 
 0.738
REEP1
Receptor accessory protein 1.
    
 
 0.722
RTN1
Reticulon 1.
   
 
 0.670
RTN2
Reticulon 2.
    
 
 0.669
RTN3
Reticulon 3.
    
 
 0.645
SPAST
Spastin.
   
 
 0.642
REEP3
Receptor accessory protein 3.
    
 
 0.637
Your Current Organism:
Neovison vison
NCBI taxonomy Id: 452646
Other names: American mink, Mustela vison, N. vison, mink
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.