FGD1 protein (Neovison vison) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

FGD1

FYVE, RhoGEF and PH domain containing 1. (960 aa)

Predicted Functional Partners:

ENSNVIP00000003529

0.898

CDC42

0.898

ENSNVIP00000030096

0.898

FGD3

0.882

ENSNVIP00000004187

0.823

ENSNVIP00000011706

0.780

ENSNVIP00000014301

0.780

ITSN1

0.647

ENSNVIP00000010944

0.534

FGD4

0.532

Your Current Organism:

Neovison vison

NCBI taxonomy Id: 452646
Other names: American mink, Mustela vison, N. vison, mink

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDC42	ENSNVIP00000010944	ENSNVIP00000029236	ENSNVIP00000010944	Cell division cycle 42.	annotation not available	0.691
CDC42	FGD1	ENSNVIP00000029236	ENSNVIP00000001456	Cell division cycle 42.	FYVE, RhoGEF and PH domain containing 1.	0.898
CDC42	FGD3	ENSNVIP00000029236	ENSNVIP00000020999	Cell division cycle 42.	FYVE, RhoGEF and PH domain containing 3.	0.878
CDC42	FGD4	ENSNVIP00000029236	ENSNVIP00000004329	Cell division cycle 42.	FYVE, RhoGEF and PH domain containing 4.	0.732
CDC42	ITSN1	ENSNVIP00000029236	ENSNVIP00000008600	Cell division cycle 42.	Intersectin 1.	0.898
ENSNVIP00000003529	ENSNVIP00000010944	ENSNVIP00000003529	ENSNVIP00000010944	annotation not available	annotation not available	0.691
ENSNVIP00000003529	FGD1	ENSNVIP00000003529	ENSNVIP00000001456	annotation not available	FYVE, RhoGEF and PH domain containing 1.	0.898
ENSNVIP00000003529	FGD3	ENSNVIP00000003529	ENSNVIP00000020999	annotation not available	FYVE, RhoGEF and PH domain containing 3.	0.878
ENSNVIP00000003529	FGD4	ENSNVIP00000003529	ENSNVIP00000004329	annotation not available	FYVE, RhoGEF and PH domain containing 4.	0.732
ENSNVIP00000003529	ITSN1	ENSNVIP00000003529	ENSNVIP00000008600	annotation not available	Intersectin 1.	0.898
ENSNVIP00000004187	ENSNVIP00000011706	ENSNVIP00000004187	ENSNVIP00000011706	annotation not available	annotation not available	0.840
ENSNVIP00000004187	ENSNVIP00000014301	ENSNVIP00000004187	ENSNVIP00000014301	annotation not available	annotation not available	0.842
ENSNVIP00000004187	FGD1	ENSNVIP00000004187	ENSNVIP00000001456	annotation not available	FYVE, RhoGEF and PH domain containing 1.	0.823
ENSNVIP00000004187	FGD3	ENSNVIP00000004187	ENSNVIP00000020999	annotation not available	FYVE, RhoGEF and PH domain containing 3.	0.823
ENSNVIP00000004187	FGD4	ENSNVIP00000004187	ENSNVIP00000004329	annotation not available	FYVE, RhoGEF and PH domain containing 4.	0.595
ENSNVIP00000010944	CDC42	ENSNVIP00000010944	ENSNVIP00000029236	annotation not available	Cell division cycle 42.	0.691
ENSNVIP00000010944	ENSNVIP00000003529	ENSNVIP00000010944	ENSNVIP00000003529	annotation not available	annotation not available	0.691
ENSNVIP00000010944	ENSNVIP00000030096	ENSNVIP00000010944	ENSNVIP00000030096	annotation not available	annotation not available	0.691
ENSNVIP00000010944	FGD1	ENSNVIP00000010944	ENSNVIP00000001456	annotation not available	FYVE, RhoGEF and PH domain containing 1.	0.534
ENSNVIP00000011706	ENSNVIP00000004187	ENSNVIP00000011706	ENSNVIP00000004187	annotation not available	annotation not available	0.840