RPL3 protein (Neovison vison) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

RPL3

Ribosomal protein L3. (403 aa)

Predicted Functional Partners:

ENSNVIP00000005139

0.999

RPS9

0.999

RPLP2

0.999

ENSNVIP00000012077

0.999

RPL18

0.999

RPL13A

0.999

ENSNVIP00000018508

0.999

ENSNVIP00000019681

0.999

RPL4

0.999

RPL24

0.999

Your Current Organism:

Neovison vison

NCBI taxonomy Id: 452646
Other names: American mink, Mustela vison, N. vison, mink

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSNVIP00000005139	ENSNVIP00000012077	ENSNVIP00000005139	ENSNVIP00000012077	annotation not available	annotation not available	0.999
ENSNVIP00000005139	ENSNVIP00000018508	ENSNVIP00000005139	ENSNVIP00000018508	annotation not available	annotation not available	0.999
ENSNVIP00000005139	ENSNVIP00000019681	ENSNVIP00000005139	ENSNVIP00000019681	annotation not available	annotation not available	0.999
ENSNVIP00000005139	RPL13A	ENSNVIP00000005139	ENSNVIP00000017450	annotation not available	Ribosomal protein L13a.	0.999
ENSNVIP00000005139	RPL18	ENSNVIP00000005139	ENSNVIP00000015513	annotation not available	Ribosomal protein L18.	0.999
ENSNVIP00000005139	RPL24	ENSNVIP00000005139	ENSNVIP00000022817	annotation not available	Ribosomal protein L24.	0.999
ENSNVIP00000005139	RPL3	ENSNVIP00000005139	ENSNVIP00000001671	annotation not available	Ribosomal protein L3.	0.999
ENSNVIP00000005139	RPL4	ENSNVIP00000005139	ENSNVIP00000020984	annotation not available	Ribosomal protein L4.	0.998
ENSNVIP00000005139	RPLP2	ENSNVIP00000005139	ENSNVIP00000007838	annotation not available	Ribosomal protein lateral stalk subunit P2.	0.999
ENSNVIP00000005139	RPS9	ENSNVIP00000005139	ENSNVIP00000005173	annotation not available	Ribosomal protein S9.	0.999
ENSNVIP00000012077	ENSNVIP00000005139	ENSNVIP00000012077	ENSNVIP00000005139	annotation not available	annotation not available	0.999
ENSNVIP00000012077	ENSNVIP00000018508	ENSNVIP00000012077	ENSNVIP00000018508	annotation not available	annotation not available	0.999
ENSNVIP00000012077	ENSNVIP00000019681	ENSNVIP00000012077	ENSNVIP00000019681	annotation not available	annotation not available	0.999
ENSNVIP00000012077	RPL13A	ENSNVIP00000012077	ENSNVIP00000017450	annotation not available	Ribosomal protein L13a.	0.999
ENSNVIP00000012077	RPL18	ENSNVIP00000012077	ENSNVIP00000015513	annotation not available	Ribosomal protein L18.	0.999
ENSNVIP00000012077	RPL24	ENSNVIP00000012077	ENSNVIP00000022817	annotation not available	Ribosomal protein L24.	0.999
ENSNVIP00000012077	RPL3	ENSNVIP00000012077	ENSNVIP00000001671	annotation not available	Ribosomal protein L3.	0.999
ENSNVIP00000012077	RPL4	ENSNVIP00000012077	ENSNVIP00000020984	annotation not available	Ribosomal protein L4.	0.999
ENSNVIP00000012077	RPLP2	ENSNVIP00000012077	ENSNVIP00000007838	annotation not available	Ribosomal protein lateral stalk subunit P2.	0.999
ENSNVIP00000012077	RPS9	ENSNVIP00000012077	ENSNVIP00000005173	annotation not available	Ribosomal protein S9.	0.999