Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
HTATSF1HIV-1 Tat specific factor 1. (767 aa)    
Predicted Functional Partners:
SF3B1
Splicing factor 3b subunit 1.
    
 0.973
ENSNVIP00000006667
Cell division cycle 40.
     
 0.967
SF3A2
Splicing factor 3a subunit 2.
   
 0.959
SNRPA1
Small nuclear ribonucleoprotein polypeptide A.
    
 0.958
TCERG1
Transcription elongation regulator 1.
   
 
 0.943
SUGP1
SURP and G-patch domain containing 1.
     
 0.938
DDX46
DEAD-box helicase 46.
   
 0.933
LUC7L3
LUC7 like 3 pre-mRNA splicing factor.
   
 
 0.926
RBM39
RNA binding motif protein 39.
     
 0.925
ENSNVIP00000030927
Protein phosphatase 1 regulatory subunit 8.
     
  0.923
Your Current Organism:
Neovison vison
NCBI taxonomy Id: 452646
Other names: American mink, Mustela vison, N. vison, mink
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