close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HTATSF1HIV-1 Tat specific factor 1. (767 aa)    
Predicted Functional Partners:
SF3B1
Splicing factor 3b subunit 1.
    
 
 0.973
CRNKL1
Crooked neck pre-mRNA splicing factor 1.
   
 
 0.957
DDX46
DEAD-box helicase 46.
   
 0.947
SF3A2
Splicing factor 3a subunit 2.
   
 
 0.929
SF1
Splicing factor 1.
     
 0.916
SNRPA1
Small nuclear ribonucleoprotein polypeptide A.
    
 
 0.908
DHX9
DExH-box helicase 9.
   
 0.896
SRRT
Serrate, RNA effector molecule.
   
 
  0.890
PRPF40A
pre-mRNA processing factor 40 homolog A.
     
 0.886
SRRM2
Serine/arginine repetitive matrix 2.
     
 0.884
Your Current Organism:
Neovison vison
NCBI taxonomy Id: 452646
Other names: American mink, Mustela vison, N. vison, mink
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.