STAMBP protein (Neovison vison) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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Experiments

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[Homology]

Score

STAMBP

STAM binding protein. (496 aa)

Predicted Functional Partners:

STAM

0.997

STAM2

0.986

GRB2

0.941

CHMP2A

0.926

RPS27A

0.925

ENSNVIP00000022379

0.925

ENSNVIP00000013320

0.919

ENSNVIP00000023202

0.919

ENSNVIP00000008604

0.898

GRAP2

0.895

Your Current Organism:

Neovison vison

NCBI taxonomy Id: 452646
Other names: American mink, Mustela vison, N. vison, mink

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CHMP2A	ENSNVIP00000008604	ENSNVIP00000016675	ENSNVIP00000008604	Charged multivesicular body protein 2A.	annotation not available	0.678
CHMP2A	ENSNVIP00000013320	ENSNVIP00000016675	ENSNVIP00000013320	Charged multivesicular body protein 2A.	annotation not available	0.991
CHMP2A	ENSNVIP00000022379	ENSNVIP00000016675	ENSNVIP00000022379	Charged multivesicular body protein 2A.	annotation not available	0.651
CHMP2A	ENSNVIP00000023202	ENSNVIP00000016675	ENSNVIP00000023202	Charged multivesicular body protein 2A.	annotation not available	0.992
CHMP2A	RPS27A	ENSNVIP00000016675	ENSNVIP00000002722	Charged multivesicular body protein 2A.	Ribosomal protein S27a.	0.651
CHMP2A	STAM	ENSNVIP00000016675	ENSNVIP00000002507	Charged multivesicular body protein 2A.	Signal transducing adaptor molecule.	0.559
CHMP2A	STAMBP	ENSNVIP00000016675	ENSNVIP00000002047	Charged multivesicular body protein 2A.	STAM binding protein.	0.926
ENSNVIP00000008604	CHMP2A	ENSNVIP00000008604	ENSNVIP00000016675	annotation not available	Charged multivesicular body protein 2A.	0.678
ENSNVIP00000008604	ENSNVIP00000022379	ENSNVIP00000008604	ENSNVIP00000022379	annotation not available	annotation not available	0.988
ENSNVIP00000008604	ENSNVIP00000023202	ENSNVIP00000008604	ENSNVIP00000023202	annotation not available	annotation not available	0.656
ENSNVIP00000008604	GRB2	ENSNVIP00000008604	ENSNVIP00000013678	annotation not available	Growth factor receptor bound protein 2.	0.689
ENSNVIP00000008604	RPS27A	ENSNVIP00000008604	ENSNVIP00000002722	annotation not available	Ribosomal protein S27a.	0.988
ENSNVIP00000008604	STAM	ENSNVIP00000008604	ENSNVIP00000002507	annotation not available	Signal transducing adaptor molecule.	0.931
ENSNVIP00000008604	STAM2	ENSNVIP00000008604	ENSNVIP00000004868	annotation not available	Signal transducing adaptor molecule 2.	0.935
ENSNVIP00000008604	STAMBP	ENSNVIP00000008604	ENSNVIP00000002047	annotation not available	STAM binding protein.	0.898
ENSNVIP00000013320	CHMP2A	ENSNVIP00000013320	ENSNVIP00000016675	annotation not available	Charged multivesicular body protein 2A.	0.991
ENSNVIP00000013320	ENSNVIP00000023202	ENSNVIP00000013320	ENSNVIP00000023202	annotation not available	annotation not available	0.984
ENSNVIP00000013320	STAMBP	ENSNVIP00000013320	ENSNVIP00000002047	annotation not available	STAM binding protein.	0.919
ENSNVIP00000022379	CHMP2A	ENSNVIP00000022379	ENSNVIP00000016675	annotation not available	Charged multivesicular body protein 2A.	0.651
ENSNVIP00000022379	ENSNVIP00000008604	ENSNVIP00000022379	ENSNVIP00000008604	annotation not available	annotation not available	0.988