KRT20 protein (Neovison vison) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KRT20

Keratin 20. (422 aa)

Predicted Functional Partners:

KRT80

0.769

LGR5

0.719

ENSNVIP00000001042

0.714

ENSNVIP00000008747

0.714

C9orf16

0.692

UNC79

0.629

VIM

0.621

DES

0.621

PAX8

0.586

CHGA

0.580

Your Current Organism:

Neovison vison

NCBI taxonomy Id: 452646
Other names: American mink, Mustela vison, N. vison, mink

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C9orf16	KRT20	ENSNVIP00000013944	ENSNVIP00000002093	Chromosome 9 open reading frame 16.	Keratin 20.	0.692
CHGA	KRT20	ENSNVIP00000008405	ENSNVIP00000002093	Chromogranin A.	Keratin 20.	0.580
CHGA	LGR5	ENSNVIP00000008405	ENSNVIP00000015034	Chromogranin A.	Leucine rich repeat containing G protein-coupled receptor 5.	0.753
DES	ENSNVIP00000001042	ENSNVIP00000029697	ENSNVIP00000001042	Desmin.	annotation not available	0.671
DES	ENSNVIP00000008747	ENSNVIP00000029697	ENSNVIP00000008747	Desmin.	annotation not available	0.671
DES	KRT20	ENSNVIP00000029697	ENSNVIP00000002093	Desmin.	Keratin 20.	0.621
DES	VIM	ENSNVIP00000029697	ENSNVIP00000002323	Desmin.	Vimentin.	0.556
ENSNVIP00000001042	DES	ENSNVIP00000001042	ENSNVIP00000029697	annotation not available	Desmin.	0.671
ENSNVIP00000001042	KRT20	ENSNVIP00000001042	ENSNVIP00000002093	annotation not available	Keratin 20.	0.714
ENSNVIP00000001042	VIM	ENSNVIP00000001042	ENSNVIP00000002323	annotation not available	Vimentin.	0.671
ENSNVIP00000008747	DES	ENSNVIP00000008747	ENSNVIP00000029697	annotation not available	Desmin.	0.671
ENSNVIP00000008747	KRT20	ENSNVIP00000008747	ENSNVIP00000002093	annotation not available	Keratin 20.	0.714
ENSNVIP00000008747	VIM	ENSNVIP00000008747	ENSNVIP00000002323	annotation not available	Vimentin.	0.671
KRT20	C9orf16	ENSNVIP00000002093	ENSNVIP00000013944	Keratin 20.	Chromosome 9 open reading frame 16.	0.692
KRT20	CHGA	ENSNVIP00000002093	ENSNVIP00000008405	Keratin 20.	Chromogranin A.	0.580
KRT20	DES	ENSNVIP00000002093	ENSNVIP00000029697	Keratin 20.	Desmin.	0.621
KRT20	ENSNVIP00000001042	ENSNVIP00000002093	ENSNVIP00000001042	Keratin 20.	annotation not available	0.714
KRT20	ENSNVIP00000008747	ENSNVIP00000002093	ENSNVIP00000008747	Keratin 20.	annotation not available	0.714
KRT20	KRT80	ENSNVIP00000002093	ENSNVIP00000005420	Keratin 20.	Keratin 80.	0.769
KRT20	LGR5	ENSNVIP00000002093	ENSNVIP00000015034	Keratin 20.	Leucine rich repeat containing G protein-coupled receptor 5.	0.719