Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TRIM56Tripartite motif containing 56. (771 aa)    
Predicted Functional Partners:
STING1
Stimulator of interferon response cGAMP interactor 1.
   
 0.874
TRIM32
Tripartite motif containing 32.
    
 0.708
AMFR
Autocrine motility factor receptor.
    
 
 0.613
ENSNVIP00000019541
Mitochondrial E3 ubiquitin protein ligase 1.
      
 0.566
TRIM35
Tripartite motif containing 35.
      
 0.554
NLRC3
NLR family CARD domain containing 3.
   
 0.514
NLRX1
NLR family member X1.
   
 0.501
DDX41
DEAD-box helicase 41.
    
 0.495
ENSNVIP00000000469
annotation not available
    
 0.493
ZDHHC1
Zinc finger DHHC-type containing 1.
    
 
 0.491
Your Current Organism:
Neovison vison
NCBI taxonomy Id: 452646
Other names: American mink, Mustela vison, N. vison, mink
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