Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RNF139Ring finger protein 139. (664 aa)    
Predicted Functional Partners:
HM13
Histocompatibility minor 13.
   
 0.946
DERL1
Derlin 1.
    
 0.761
VCP
Valosin containing protein.
    
 0.759
UBE2G2
Ubiquitin conjugating enzyme E2 G2.
    
 
 0.742
SEL1L
SEL1L adaptor subunit of ERAD E3 ubiquitin ligase.
    
 0.740
ERLEC1
Endoplasmic reticulum lectin 1.
   
 0.718
OS9
OS9 endoplasmic reticulum lectin.
   
 0.709
ENSNVIP00000019763
Glucuronic acid epimerase.
   
 
  0.684
INSIG1
Insulin induced gene 1.
    
 
 0.682
ENSNVIP00000003222
Insulin induced gene 2.
    
 
 0.682
Your Current Organism:
Neovison vison
NCBI taxonomy Id: 452646
Other names: American mink, Mustela vison, N. vison, mink
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