STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRMT12tRNA methyltransferase 12 homolog. (439 aa)    
Predicted Functional Partners:
HSPA4
Heat shock protein family A (Hsp70) member 4.
    
   0.844
TRIT1
tRNA isopentenyltransferase 1.
   
  
 0.763
ENSNVIP00000021705
Dihydrouridine synthase 1 like.
   
  
 0.762
ENSNVIP00000002011
tRNA methyltransferase 11 homolog.
   
  
 0.759
TRMU
tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase.
   
  
 0.757
YRDC
yrdC N6-threonylcarbamoyltransferase domain containing.
   
  
 0.757
TRMT10C
tRNA methyltransferase 10C, mitochondrial RNase P subunit.
   
  
 0.754
TRMT2A
tRNA methyltransferase 2 homolog A.
   
  
 0.737
ENSNVIP00000000944
annotation not available
   
 
 0.734
ENSNVIP00000013035
annotation not available
   
 
 0.734
Your Current Organism:
Neovison vison
NCBI taxonomy Id: 452646
Other names: American mink, Mustela vison, N. vison, mink
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.