PDCD2 protein (Neovison vison) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

PDCD2

Programmed cell death 2. (284 aa)

Predicted Functional Partners:

ENSNVIP00000002179

0.754

PSMB1

0.752

ZNF277

0.742

ENSNVIP00000027669

0.714

ENSNVIP00000013029

0.704

ENSNVIP00000015200

0.704

ENSNVIP00000018298

0.704

ENSNVIP00000028705

0.704

ENSNVIP00000010883

0.687

ENSNVIP00000014283

0.687

Your Current Organism:

Neovison vison

NCBI taxonomy Id: 452646
Other names: American mink, Mustela vison, N. vison, mink

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSNVIP00000002179	PDCD2	ENSNVIP00000002179	ENSNVIP00000002276	annotation not available	Programmed cell death 2.	0.754
ENSNVIP00000002179	PSMB1	ENSNVIP00000002179	ENSNVIP00000002219	annotation not available	Proteasome 20S subunit beta 1.	0.691
ENSNVIP00000010883	ENSNVIP00000027669	ENSNVIP00000010883	ENSNVIP00000027669	annotation not available	annotation not available	0.431
ENSNVIP00000010883	PDCD2	ENSNVIP00000010883	ENSNVIP00000002276	annotation not available	Programmed cell death 2.	0.687
ENSNVIP00000013029	ENSNVIP00000018298	ENSNVIP00000013029	ENSNVIP00000018298	annotation not available	annotation not available	0.917
ENSNVIP00000013029	ENSNVIP00000027669	ENSNVIP00000013029	ENSNVIP00000027669	annotation not available	annotation not available	0.844
ENSNVIP00000013029	ENSNVIP00000028705	ENSNVIP00000013029	ENSNVIP00000028705	annotation not available	annotation not available	0.820
ENSNVIP00000013029	PDCD2	ENSNVIP00000013029	ENSNVIP00000002276	annotation not available	Programmed cell death 2.	0.704
ENSNVIP00000014283	ENSNVIP00000027669	ENSNVIP00000014283	ENSNVIP00000027669	annotation not available	annotation not available	0.431
ENSNVIP00000014283	PDCD2	ENSNVIP00000014283	ENSNVIP00000002276	annotation not available	Programmed cell death 2.	0.687
ENSNVIP00000015200	ENSNVIP00000018298	ENSNVIP00000015200	ENSNVIP00000018298	annotation not available	annotation not available	0.913
ENSNVIP00000015200	ENSNVIP00000027669	ENSNVIP00000015200	ENSNVIP00000027669	annotation not available	annotation not available	0.844
ENSNVIP00000015200	ENSNVIP00000028705	ENSNVIP00000015200	ENSNVIP00000028705	annotation not available	annotation not available	0.918
ENSNVIP00000015200	PDCD2	ENSNVIP00000015200	ENSNVIP00000002276	annotation not available	Programmed cell death 2.	0.704
ENSNVIP00000018298	ENSNVIP00000013029	ENSNVIP00000018298	ENSNVIP00000013029	annotation not available	annotation not available	0.917
ENSNVIP00000018298	ENSNVIP00000015200	ENSNVIP00000018298	ENSNVIP00000015200	annotation not available	annotation not available	0.913
ENSNVIP00000018298	ENSNVIP00000027669	ENSNVIP00000018298	ENSNVIP00000027669	annotation not available	annotation not available	0.844
ENSNVIP00000018298	ENSNVIP00000028705	ENSNVIP00000018298	ENSNVIP00000028705	annotation not available	annotation not available	0.552
ENSNVIP00000018298	PDCD2	ENSNVIP00000018298	ENSNVIP00000002276	annotation not available	Programmed cell death 2.	0.704
ENSNVIP00000027669	ENSNVIP00000010883	ENSNVIP00000027669	ENSNVIP00000010883	annotation not available	annotation not available	0.431