Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PDLIM1PDZ and LIM domain 1. (327 aa)    
Predicted Functional Partners:
ACTN2
Actinin alpha 2.
   
 
 0.920
ENSNVIP00000007496
PDZ and LIM domain 3.
     
 
0.915
ENSNVIP00000023156
PDZ and LIM domain 4.
     
 
0.915
ENSNVIP00000030489
annotation not available
     
 
0.915
GFAP
Glial fibrillary acidic protein.
   
 
 0.836
ACTN4
Actinin alpha 4.
   
 
 0.830
ACTN1
Actinin alpha 1.
   
 
 0.830
ACTN3
Actinin alpha 3 (gene/pseudogene).
   
 
 0.743
STK35
Serine/threonine kinase 35.
    
 
 0.736
ENSNVIP00000029396
annotation not available
 
 
 
 0.723
Your Current Organism:
Neovison vison
NCBI taxonomy Id: 452646
Other names: American mink, Mustela vison, N. vison, mink
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