RRAGD protein (Neovison vison) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

RRAGD

Ras related GTP binding D. (396 aa)

Predicted Functional Partners:

RRAGC

0.999

RPTOR

0.996

LAMTOR4

0.994

LAMTOR2

0.994

LAMTOR1

0.992

LAMTOR3

0.991

MTOR

0.989

RRAGB

0.986

RRAGA

0.986

SLC38A9

0.979

Your Current Organism:

Neovison vison

NCBI taxonomy Id: 452646
Other names: American mink, Mustela vison, N. vison, mink

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LAMTOR1	LAMTOR2	ENSNVIP00000026488	ENSNVIP00000026402	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 2.	0.999
LAMTOR1	LAMTOR3	ENSNVIP00000026488	ENSNVIP00000005553	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 3.	0.999
LAMTOR1	LAMTOR4	ENSNVIP00000026488	ENSNVIP00000000534	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 4.	0.999
LAMTOR1	MTOR	ENSNVIP00000026488	ENSNVIP00000010130	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1.	Mechanistic target of rapamycin kinase.	0.938
LAMTOR1	RPTOR	ENSNVIP00000026488	ENSNVIP00000019833	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1.	Regulatory associated protein of MTOR complex 1.	0.985
LAMTOR1	RRAGA	ENSNVIP00000026488	ENSNVIP00000016867	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1.	Ras related GTP binding A.	0.982
LAMTOR1	RRAGB	ENSNVIP00000026488	ENSNVIP00000015330	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1.	Ras related GTP binding B.	0.973
LAMTOR1	RRAGC	ENSNVIP00000026488	ENSNVIP00000016928	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1.	Ras related GTP binding C.	0.997
LAMTOR1	RRAGD	ENSNVIP00000026488	ENSNVIP00000002681	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1.	Ras related GTP binding D.	0.992
LAMTOR1	SLC38A9	ENSNVIP00000026488	ENSNVIP00000012099	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1.	Solute carrier family 38 member 9.	0.998
LAMTOR2	LAMTOR1	ENSNVIP00000026402	ENSNVIP00000026488	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 2.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1.	0.999
LAMTOR2	LAMTOR3	ENSNVIP00000026402	ENSNVIP00000005553	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 2.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 3.	0.999
LAMTOR2	LAMTOR4	ENSNVIP00000026402	ENSNVIP00000000534	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 2.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 4.	0.998
LAMTOR2	MTOR	ENSNVIP00000026402	ENSNVIP00000010130	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 2.	Mechanistic target of rapamycin kinase.	0.922
LAMTOR2	RPTOR	ENSNVIP00000026402	ENSNVIP00000019833	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 2.	Regulatory associated protein of MTOR complex 1.	0.953
LAMTOR2	RRAGA	ENSNVIP00000026402	ENSNVIP00000016867	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 2.	Ras related GTP binding A.	0.981
LAMTOR2	RRAGB	ENSNVIP00000026402	ENSNVIP00000015330	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 2.	Ras related GTP binding B.	0.972
LAMTOR2	RRAGC	ENSNVIP00000026402	ENSNVIP00000016928	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 2.	Ras related GTP binding C.	0.996
LAMTOR2	RRAGD	ENSNVIP00000026402	ENSNVIP00000002681	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 2.	Ras related GTP binding D.	0.994
LAMTOR2	SLC38A9	ENSNVIP00000026402	ENSNVIP00000012099	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 2.	Solute carrier family 38 member 9.	0.998